This page is part of the Genetic Reporting Implementation Guide (v3.0.0: STU3) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input | Version: 3.0.0 | |||
| Active as of 2024-12-12 | Computable Name: GenomicStudyAnalysisInput | |||
Genomic Study Analysis Input
Context of Use
This extension may be used on the following element(s):
Usage info
Usage:
Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.
This structure is derived from Extension
This structure is derived from Extension
| Name | Flags | Card. | Type | Description & Constraints  | 
|---|---|---|---|---|
|   Extension | 0..* | Extension | Genomic Study Analysis Input | |
|    Slices for extension | Content/Rules for all slices | |||
|     extension:file | 0..1 | Extension | GenomicStudy.analysis.input.file | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "file" | |
|      value[x] | 0..1 | Reference(Genomic Data File) | Value of extension | |
|     extension:type | 0..1 | Extension | GenomicStudy.analysis.input.type | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "type" | |
|      value[x] | 0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
|     extension:generatedBy | 0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "generatedBy" | |
|      value[x] | 0..1 | Value of extension | ||
|       valueIdentifier | Identifier | |||
|       valueReference | Reference(Genomic Study) | |||
|    url | 1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
|    value[x] | 0..0 | |||
|  Documentation for this format | ||||
| Name | Flags | Card. | Type | Description & Constraints  | 
|---|---|---|---|---|
|   Extension | 0..* | Extension | Genomic Study Analysis Input | |
|    id | 0..1 | string | Unique id for inter-element referencing | |
|    Slices for extension | 0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |
|     extension:file | 0..1 | Extension | GenomicStudy.analysis.input.file | |
|      id | 0..1 | string | Unique id for inter-element referencing | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "file" | |
|      value[x] | 0..1 | Reference(Genomic Data File) | Value of extension | |
|     extension:type | 0..1 | Extension | GenomicStudy.analysis.input.type | |
|      id | 0..1 | string | Unique id for inter-element referencing | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "type" | |
|      value[x] | 0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
|     extension:generatedBy | 0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
|      id | 0..1 | string | Unique id for inter-element referencing | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "generatedBy" | |
|      value[x] | 0..1 | Value of extension | ||
|       valueIdentifier | Identifier | |||
|       valueReference | Reference(Genomic Study) | |||
|    url | 1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
|  Documentation for this format | ||||
This structure is derived from Extension
Differential View
This structure is derived from Extension
| Name | Flags | Card. | Type | Description & Constraints  | 
|---|---|---|---|---|
|   Extension | 0..* | Extension | Genomic Study Analysis Input | |
|    Slices for extension | Content/Rules for all slices | |||
|     extension:file | 0..1 | Extension | GenomicStudy.analysis.input.file | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "file" | |
|      value[x] | 0..1 | Reference(Genomic Data File) | Value of extension | |
|     extension:type | 0..1 | Extension | GenomicStudy.analysis.input.type | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "type" | |
|      value[x] | 0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
|     extension:generatedBy | 0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "generatedBy" | |
|      value[x] | 0..1 | Value of extension | ||
|       valueIdentifier | Identifier | |||
|       valueReference | Reference(Genomic Study) | |||
|    url | 1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
|    value[x] | 0..0 | |||
|  Documentation for this format | ||||
Snapshot View
| Name | Flags | Card. | Type | Description & Constraints  | 
|---|---|---|---|---|
|   Extension | 0..* | Extension | Genomic Study Analysis Input | |
|    id | 0..1 | string | Unique id for inter-element referencing | |
|    Slices for extension | 0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |
|     extension:file | 0..1 | Extension | GenomicStudy.analysis.input.file | |
|      id | 0..1 | string | Unique id for inter-element referencing | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "file" | |
|      value[x] | 0..1 | Reference(Genomic Data File) | Value of extension | |
|     extension:type | 0..1 | Extension | GenomicStudy.analysis.input.type | |
|      id | 0..1 | string | Unique id for inter-element referencing | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "type" | |
|      value[x] | 0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
|     extension:generatedBy | 0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
|      id | 0..1 | string | Unique id for inter-element referencing | |
|      extension | 0..0 | |||
|      url | 1..1 | uri | "generatedBy" | |
|      value[x] | 0..1 | Value of extension | ||
|       valueIdentifier | Identifier | |||
|       valueReference | Reference(Genomic Study) | |||
|    url | 1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
|  Documentation for this format | ||||
Other representations of profile: CSV, Excel, Schematron
| Path | Conformance | ValueSet | URI | 
| Extension.extension:type.value[x] | preferred | GenomicStudyDataFormatVS (a valid code from Genomic Study Data Format CodeSystem) http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-data-format-vsfrom this IG | 
| Id | Grade | Path(s) | Details | Requirements | 
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |