This page is part of the Genetic Reporting Implementation Guide (v3.0.0: STU3) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-data-format-vs | Version: 3.0.0 | |||
| Active as of 2024-12-12 | Computable Name: GenomicStudyDataFormatVS | |||
Backport of http://hl7.org/fhir/ValueSet/genomicstudy-dataformat
References
Generated Narrative: ValueSet genomic-study-data-format-vs
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs
Generated Narrative: ValueSet
Expansion based on codesystem Genomic Study Data Format CodeSystem v3.0.0 (CodeSystem)
This value set contains 40 concepts
| Code | System | Display | 
| bam | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BAM | 
| bed | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BED | 
| bedpe | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BEDPE | 
| bedgraph | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BedGraph | 
| bigbed | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | bigBed | 
| bigWig | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | bigWig | 
| birdsuite-files | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Birdsuite-Files | 
| broadpeak | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | broadPeak | 
| cbs | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CBS | 
| chemical-reactivity-probing-profiles | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Chemical-Reactivity-Probing-Profiles | 
| chrom-sizes | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | chrom-sizes | 
| cn | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CN | 
| custom-file-formats | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Custom-File-Formats | 
| cytoband | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Cytoband | 
| fasta | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | FASTA | 
| gct | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GCT | 
| cram | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CRAM | 
| genepred | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | genePred | 
| gff-gtf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GFF/GTF | 
| gistic | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GISTIC | 
| goby | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Goby | 
| gwas | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GWAS | 
| igv | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | IGV | 
| loh | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | LOH | 
| maf-multiple-alignment-format | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MAF-Multiple Alignment Format | 
| maf-mutation-annotation-format | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MAF-Mutation-Annotation-Format | 
| merged-bam-file | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Merged BAM File | 
| mut | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MUT | 
| narrowpeak | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | narrowPeak | 
| psl | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | PSL | 
| res | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | RES | 
| rna-secondary-structure-formats | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | RNA-Secondary-Structure-Formats | 
| sam | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | SAM | 
| sample-info-attributes-file | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Sample-Info-Attributes-file | 
| seg | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | SEG | 
| tdf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | TDF | 
| track-line | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Track Line | 
| type-line | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Type Line | 
| vcf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | VCF | 
| wig | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | WIG | 
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies | 
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) | 
| Code | The code (used as the code in the resource instance) | 
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application | 
| Definition | An explanation of the meaning of the concept | 
| Comments | Additional notes about how to use the code |