This page is part of a downloaded copy of this specification. This page is part of the Genetic Reporting Implementation Guide (v1.0.0: STU 1) based on FHIR R4. For a full list of available versions, see the Directory of published versions 
{
"resourceType" : "CodeSystem",
"id" : "seq-phase-relationship",
"meta" : {
"profile" : [
"http://hl7.org/fhir/StructureDefinition/shareablecodesystem"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>seq-phase-relationship</h2><div><p>Sequence Phase Relationship Types</p>\n</div><p>This code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/seq-phase-relationship defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">Cis<a name=\"seq-phase-relationship-Cis\"> </a></td><td>Cis</td><td>Phase is in cis (same chromosome)</td></tr><tr><td style=\"white-space:nowrap\">Trans<a name=\"seq-phase-relationship-Trans\"> </a></td><td>Trans</td><td>Phase is in trans (different chromosomes)</td></tr><tr><td style=\"white-space:nowrap\">Indeterminate<a name=\"seq-phase-relationship-Indeterminate\"> </a></td><td>Indeterminate</td><td>Phase is unable to be determined</td></tr><tr><td style=\"white-space:nowrap\">Unknown<a name=\"seq-phase-relationship-Unknown\"> </a></td><td>Unknown</td><td>Phase is unknown</td></tr></table></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "cg"
}
],
"url" : "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/seq-phase-relationship",
"version" : "1.0.0",
"name" : "SequencePhaseRelationship",
"title" : "seq-phase-relationship",
"status" : "draft",
"experimental" : false,
"date" : "2019-08-21T00:00:00-04:00",
"publisher" : "HL7 (Clinical Genomics)",
"contact" : [
{
"telecom" : [
{
"system" : "url",
"value" : "http://hl7.org/fhir"
},
{
"system" : "email",
"value" : "fhir@lists.hl7.org"
}
]
},
{
"telecom" : [
{
"system" : "url"
},
{
"system" : "email"
}
]
}
],
"description" : "Sequence Phase Relationship Types",
"caseSensitive" : true,
"valueSet" : "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/seq-phase-relationship",
"content" : "complete",
"concept" : [
{
"code" : "Cis",
"display" : "Cis",
"definition" : "Phase is in cis (same chromosome)"
},
{
"code" : "Trans",
"display" : "Trans",
"definition" : "Phase is in trans (different chromosomes)"
},
{
"code" : "Indeterminate",
"display" : "Indeterminate",
"definition" : "Phase is unable to be determined"
},
{
"code" : "Unknown",
"display" : "Unknown",
"definition" : "Phase is unknown"
}
]
}