minimal Common Oncology Data Elements (mCODE) Implementation Guide
2.0.0 - STU 2

Publication Build: This will be filled in by the publication tooling

Example DiagnosticReport: genomics-report-john-anyperson

Master HL7 genetic variant reporting panel (Laboratory, Genetics)

SubjectJohn B. Anyperson ?? 1951-01-20 ( Medical Record Number: m123 (USUAL))
When For2019-04-01
Reported2019-04-01T00:45:33Z

Report Details

CodeValueFlagsWhen ForReported
Genetic variant assessmentPresentPositive (qualifier value)2019-04-01
DNA region of interest panel2019-04-01

Notes:

Instance: genomics-report-john-anyperson
InstanceOf: GenomicsReport
Title: "genomics-report-john-anyperson"
Description: "mCODE Example for Genomics Report"
Usage: #example
* status = #final
* category[0] = http://terminology.hl7.org/CodeSystem/v2-0074#LAB
* category[+] = http://terminology.hl7.org/CodeSystem/v2-0074#GE
* code = http://loinc.org#81247-9
* subject = Reference(cancer-patient-john-anyperson)
* effectiveDateTime = "2019-04-01"
* issued = "2019-04-01T11:45:33+11:00"
* specimen = Reference(genomic-specimen-lung)
* result[0] = Reference(genomic-variant-somatic-single-nucleotide)
* result[+] = Reference(genomic-region-studied-stk11)