Observation-example-genetics-4.ttl

Genetics example 4

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Observation/example-genetics-4> a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-genetics-4"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p/><p><b>code</b>: <span>Allele ABC</span></p><p><b>subject</b>: <a>Molecular Lab Patient ID: HOSP-23456. Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; </a></p><p><b>issued</b>: 4 Apr. 2013, 1:30:10 am</p><p><b>performer</b>: <a>Molecular Diagnostics Laboratory. Generated Summary: id: 23; active; Adam Careful </a></p><p><b>interpretation</b>: <span>Positive</span></p><p><b>specimen</b>: <a>Molecular Specimen ID: MLD45-Z4-1234</a></p><p><b>hasMember</b>: </p><ul><li><a>Variant-1. Generated Summary: <span>Genetic analysis master panel-- This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result.</span>; issued: 4 Apr. 2013, 1:30:10 am; <span>Positive</span></a></li><li><a>Variant-2. Generated Summary: <span>Genetic analysis master panel--This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result.</span>; issued: 4 Apr. 2013, 1:30:10 am; <span>Positive</span></a></li><li><a>Variant-3. Generated Summary: <span>Further analysis</span>; issued: 4 Apr. 2013, 1:30:10 am; The EGFR p.L858R mutation has been associated with response to anti-EGFR therapy</a></li></ul></div>"
  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.code [
     fhir:CodeableConcept.text [ fhir:value "Allele ABC" ]
  ];
  fhir:Observation.subject [
     fhir:link <http://hl7.org/fhir/Patient/example>;
     fhir:Reference.reference [ fhir:value "Patient/example" ];
     fhir:Reference.display [ fhir:value "Molecular Lab Patient ID: HOSP-23456" ]
  ];
  fhir:Observation.issued [ fhir:value "2013-04-03T15:30:10+01:00"^^xsd:dateTime];
  fhir:Observation.performer [
     fhir:index 0;
     fhir:link <http://hl7.org/fhir/Practitioner/example>;
     fhir:Reference.reference [ fhir:value "Practitioner/example" ];
     fhir:Reference.display [ fhir:value "Molecular Diagnostics Laboratory" ]
  ];
  fhir:Observation.interpretation [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" ];
       fhir:Coding.code [ fhir:value "POS" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Positive" ]
  ];
  fhir:Observation.specimen [
     fhir:link <http://hl7.org/fhir/Specimen/genetics-example1-somatic>;
     fhir:Reference.reference [ fhir:value "Specimen/genetics-example1-somatic" ];
     fhir:Reference.display [ fhir:value "Molecular Specimen ID: MLD45-Z4-1234" ]
  ];
  fhir:Observation.hasMember [
     fhir:index 0;
     fhir:link <http://hl7.org/fhir/Observation/example-genetics-1>;
     fhir:Reference.reference [ fhir:value "Observation/example-genetics-1" ];
     fhir:Reference.display [ fhir:value "Variant-1" ]
  ], [
     fhir:index 1;
     fhir:link <http://hl7.org/fhir/Observation/example-genetics-2>;
     fhir:Reference.reference [ fhir:value "Observation/example-genetics-2" ];
     fhir:Reference.display [ fhir:value "Variant-2" ]
  ], [
     fhir:index 2;
     fhir:link <http://hl7.org/fhir/Observation/example-genetics-3>;
     fhir:Reference.reference [ fhir:value "Observation/example-genetics-3" ];
     fhir:Reference.display [ fhir:value "Variant-3" ]
  ] .

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

<http://hl7.org/fhir/Practitioner/example> a fhir:Practitioner .

<http://hl7.org/fhir/Specimen/genetics-example1-somatic> a fhir:Specimen .

<http://hl7.org/fhir/Observation/example-genetics-1> a fhir:Observation .

<http://hl7.org/fhir/Observation/example-genetics-2> a fhir:Observation .

<http://hl7.org/fhir/Observation/example-genetics-3> a fhir:Observation .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Observation/example-genetics-4.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Observation/example-genetics-4.ttl> .

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